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Stephens, Matthew

One or more keywords matched the following items that are connected to Stephens, Matthew

Item Type	Name
Concept	Gene Expression Regulation
Concept	Gene Expression
Concept	Gene Expression Regulation, Developmental
Concept	Gene Expression Profiling
Academic Article	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.
Academic Article	Sex-specific and lineage-specific alternative splicing in primates.
Academic Article	Understanding mechanisms underlying human gene expression variation with RNA sequencing.
Academic Article	Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data.
Academic Article	Interactions between glucocorticoid treatment and cis-regulatory polymorphisms contribute to cellular response phenotypes.
Academic Article	Dissecting the regulatory architecture of gene expression QTLs.
Academic Article	The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels.
Academic Article	Mapping gene-environment interactions at regulatory polymorphisms: insights into mechanisms of phenotypic variation.
Academic Article	DNase?I sensitivity QTLs are a major determinant of human expression variation.
Academic Article	High-resolution mapping of expression-QTLs yields insight into human gene regulation.
Academic Article	Genetic, functional and molecular features of glucocorticoid receptor binding.
Academic Article	A statistical framework for joint eQTL analysis in multiple tissues.
Academic Article	Mangravite et al. reply.
Academic Article	Probabilistic segmentation and intensity estimation for microarray images.
Academic Article	Epigenetic modifications are associated with inter-species gene expression variation in primates.
Academic Article	A statin-dependent QTL for GATM expression is associated with statin-induced myopathy.
Academic Article	The genetic architecture of gene expression levels in wild baboons.
Academic Article	Differential gene induction by type I and type II interferons and their combination.
Academic Article	msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding.
Academic Article	Variance adaptive shrinkage (vash): flexible empirical Bayes estimation of variances.
Academic Article	Visualizing the structure of RNA-seq expression data using grade of membership models.
Academic Article	Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs.
Academic Article	Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions.
Academic Article	Discovery and characterization of variance QTLs in human induced pluripotent stem cells.
Academic Article	Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.
Academic Article	Cell type-specific genetic regulation of gene expression across human tissues.
Academic Article	The impact of sex on gene expression across human tissues.
Academic Article	Exploiting the GTEx resources to decipher the mechanisms at GWAS loci.
Academic Article	Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes.
Academic Article	Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis.
Grant	Statistical analysis of gene expression quantitative trait loci (eQTL)
Grant	Genome analysis: statistical methods and applications
Academic Article	A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes.
Academic Article	GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership.

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Gene Expression